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Facies modeling of sedimentary basins and hydrocarbon reservoirs is a well-established field, but most methods focus on siliciclastic facies, with well-defined shapes. Ultra-deep carbonate sedimentary basins, on the other hand, began to be explored recently and there is a great need for technological development for their modeling. In addition to the challenge of integrating spatial data from different scales for modeling thin layers, there is a distinctive feature in carbonates, which is the asymmetric repetition of facies. Therefore, the quantification of geological uncertainty can be modeled through techniques that use Markov chains. Secondary information from seismic surveys can help generate auxiliary probabilistic fields and trend model. However, the challenge lies in calculating the lateral facies transition probabilities. We propose an innovative methodology to quantify uncertainty of ultra-deep carbonate facies. The methodology uses Markov chains random fields with trend simulation with Bayesian approach to generate facies realizations through three input variables: transiogram model, probability field model, and trend model. The results were compared to sequential indicator co-simulation. The method presented satisfactory results, with significant gains in reproducing the spatial characteristics of ultra-deep carbonates facies.