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We present a study using a novel Floating Transient ElectroMagnetic (FloaTEM, [ 1 ]) method to identify the riverbed heterogeneity of the Ganges and Varuna River in India. The geophysics gives a detailed 2D image of the subsurface resistivity structures down to 100 m depth on a scale of several tens of kilometres. The images presented here were obtained within a few days of mapping providing a unique insight in the hydrogeological setting of the rivers. This information that can be used for groundwater management with respect to assessing aquifer geometry, investigate suitable sites for managed aquifer recharge and inform about potential groundwater-surface dynamics. The river water conductivity is measured by a probe as well as the water column thickness. The conductivity can be used to inform about water quality and the water column thickness can be used as prior information for inversion.